First, we create example.R.
example.R
library(datasets) data(iris) summary(iris)
To run in batch mode, you may use
R CMD BATCH --no-restore --no-save example5.R myoutput.txt
Here is an example of the submission script:
#!/bin/tcsh # #SBATCH --qos=cu_htc #SBATCH --partition=cpugpu #SBATCH --job-name=example5 #SBATCH --output=example5_log.txt #SBATCH --nodes=1 #SBATCH --ntasks=1 #SBATCH --time=00:10:00 #SBATCH --cpus-per-task=1 #SBATCH --mem-per-cpu=2G module purge R CMD BATCH --no-save --no-restore example5.R example5_output.txt
Last updated 3 years ago